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These chocolate chip protein cookies are buttery, lightly sweet, packed with 10 grams of protein each, and just enough chocolate chips. They taste like soft, chewy chocolate chip cookies first, and protein cookies second!

Why this recipe works
Most protein cookies rely on nut butter for structure and protein content. These use protein powder instead, so the flavor stays closer to a classic chocolate chip cookie.
Since protein powder can make cookies dry and chalky easily, this recipe uses finely ground oat flour, melted butter, eggs, and just enough sugar to keep the cookies soft and chewy.
The key is pulling them from the oven before they look fully baked so they don't dry out. When the tops are still pale and the edges are just beginning to brown, take them out, and they’ll finish setting as they cool.
Recipe ingredients
Here's what you need to make these protein cookies. For full ingredient amounts, see the recipe card below.

- Oat flour: Provides structure, adds some lightly sweet flavor and density to the cookies by helping them retain moisture better. I prefer to use finely ground and sifted store-bought oat flour here to avoid any added texture, but you can grind old fashioned oats in the blender then sift out any larger pieces, but it must be as finely ground and sifted as possible or it won't create a stable enough structure. If necessary, be sure your oat flour and/or oats are gluten free, like from nuts dot com or Gold Medal brand.
- Protein powder: Whey protein isolate is a flavorless, nearly-pure form of casein, or milk protein, and is the type of protein that is best for muscle growth (source). It absorbs a lot of moisture, though, so it tends to dry out baked goods.
- Sugars: A combination of white and light brown sugars adds sweetness, some depth of flavor, and helps lock in moisture.
- Baking soda: Helps the cookies brown in the oven.
- Salt: Brightens the other flavors.
- Butter: Adds buttery flavor, moisture, and when melted first, adds some pleasant denseness to the cookies.
- Eggs: Bind the dry ingredients together and help create structure so the cookies hold their shape as they cool.
- Chocolate chips: Add rich chocolate flavor and texture to the cookies. You can use any flavor of chip, or chopped semi-soft nuts like pecans or walnuts.

How to make chocolate chip protein cookies (step by step photos)
Here's a visual overview of how to make these cookies, including the reason behind each instruction:
Mix dry ingredients
Whisk together the oat flour, protein powder, white and brown sugars, baking soda, and salt so there are no pockets of leaveners or salt, and everything is mixed evenly. Break up any lumps in the brown sugar, which tends to clump.


Add in wet ingredients
Make a well in the center of the dry ingredients, place melted butter and beaten eggs in it, and mix until combined into a thick dough. This helps contain the liquids so there's no mess, and brings everything together evenly and quickly without overmixing and creating a stringy, tough batter.


Add chocolate chips
Add most of the chocolate chips and mix in until they're evenly distributed so each cookie has some chips. Reserve some to add to the top of the portions.
Scoop portions
Use a medium spring-loaded ice cream scoop or two spoons to create portions about 1 1/2 tablespoons each, weighing about 2 1/4 ounces. Evenly sized portions bake evenly and are all done at the same time.


Roll dough
Roll each portion of dough into a round between your palms so your cookies have smooth tops and bake into properly shaped rounds. Press some of the reserved chocolate chips into the top of each ball so you can see the chips after baking.
Bake cookies
Bake at 325°F for about 9 minutes, or just until the cookies are almost fully set in the center, but have only visibly browned around the edges. The longer the cookies bake, the more moisture bakes off and the more dry they'll taste.


Ingredient substitutions
I haven't tried most of these substitutions, but if you need to avoid additional allergens and would like to experiment, here are my suggestions for where to begin:
Dairy free
To replace the butter in these cookies, try using block-style vegan butter like Melt or Miyoko's brand. In place of whey protein isolate, you can try using collagen peptides Vital Proteins Collagen Peptides and Perfect Hydrolyzed Collagen Peptides for a similar result, although not identical. You can also try using your favorite flavored protein powder, like I like Vega essentials chocolate flavor protein powder like I use in our homemade protein bars. Those protein powders have other added ingredients, though, so it may have more of an effect on the outcome. If you'd like a different kind of dairy free protein-rich snack, try a batch of our protein balls, which have 6 grams of protein each without protein powder.
Oat free
If you can't have oats at all, you can try grinding quinoa flakes to use in their place or another substitute for oats. You can also try superfinely ground and sifted almond flour in its place like Blue Diamond or Wellbee's brand.
Egg free
In place of the two eggs in these cookies, try two “chia eggs” (2 tablespoons ground white chia seeds + 4 tablespoons lukewarm water, mixed and allowed to gel), Bob's Red Mill egg replacer, or JustEgg liquid refrigerated egg replacer.
Can you use sugar alternatives?
You can try using Lakanto brand sugar alternatives, but since sugar locks in moisture and alternatives tend to dry out baked goods, your cookies will end up much more dry.
Storage instructions
Store in a sealed container at room temperature for about 5 days. For longer storage, freeze in a freezer-safe zip top bag for about 3 months. Let frozen cookies defrost briefly so the chips aren't too hard to bite.

Chocolate Chip Protein Cookies Recipe

Ingredients
- 1 ¼ cups (150 g) finely-ground oat flour, gluten free if necessary
- 2 ⅓ scoops (70 g) whey protein isolate powder
- ½ teaspoon baking soda
- ½ teaspoon kosher salt
- ¼ cup (50 g) granulated sugar
- ¼ cup (55 g) packed light brown sugar
- 6 tablespoons (84 g) unsalted butter, melted and cooled
- 2 (100 g out of shell) eggs, at room temperature, beaten
- 5 ounces semi sweet chocolate chips
Instructions
- Preheat your oven to 325°F. Line a large rimmed baking sheet with unbleached parchment paper and set it aside.
- In a large bowl, place the oat flour, protein powder, baking soda, salt, and granulated sugar, and brown sugar, and whisk to combine well. Use the back of a spoon or a fork to break up any lumps in the brown sugar.
- Create a well in the center of the dry ingredients, and add the butter and beaten eggs.
- Use the back of the mixing spoon to press the wet ingredients into the dry ones, turning the dough over until the dry ingredients have been completely absorbed. The dough will be soft and sticky.
- Add 4 ounces of the chocolate chips, and mix until evenly distributed throughout the cookie dough.
- Using a spring-loaded ice cream scoop or two spoons, scoop the dough into portions a bit more than 1 1/2 tablespoons, each weighing about 2 1/4 ounces.
- Roll each piece of dough into a round and place about 2-inches apart from one another on the prepared baking sheet.
- Top the rounds of cookie dough with some of the remaining chocolate chips.
- Place the baking sheet in the center of the preheated oven and bake until the cookies are set in the center and are just beginning to brown around the edges, about 9 minutes. They should still be very pale across the top and even a bit wet in the center. Over baking will make them taste dry.
- Remove the cookies from the oven and allow to cool on the baking sheet until firm, about 5 minutes, then move to a wire rack to cool completely.
Nutrition
Nutrition information is automatically calculated, so should only be used as an approximation.















Help! I measured everything and my dough was thin and runny. I had to scoop onto pan and they spread out very thin and got bubbly. They never firmed up much even when cool. The ONLY substitute was Orgain Collagen peptides instead of Vital Nutrient, although I thought they were the same item. I usually have great luck with your recipes. Many of your comments are about almond flour but the recipe calls for oat.
I’m afraid that it’s most likely your selection of ingredients, Sally. There is tremendous variation among brands of every ingredient, particularly protein powders, I’m afraid, which is why I always recommend some and not others. I would also take a look at whether you measured your ingredients by weight, which is reliable, or volume, which is not. And whether you used a finely ground and sifted oat flour, which is also important for proper structure.
Can you use oat flour for this recipe?
Hi, Anja, sometimes oat flour can be used as a loose approximate replacement for almond flour, but I haven’t tried it in this recipe, and I don’t really recommend it, particularly since it’s mostly made with almond flour.
Delicious and moist! My husband even ate them and he won’t eat gf food.
That’s great to hear, Susan! Gluten free food that the gluten eaters will eat happily is always the goal!
Totally Nicole, I realize in retrospect that my first comment could have been read as a reference to the recipe as written as opposed to me just lamenting unsuccessful tweaks, which is why I thought it important to make note of the changes I made. I definitely recognize that baking recipes, especially gluten free, usually are a fine balance of a number of factors. Thanks again!
All true, Emma!! ?
Thanks so much for the input Nicole, it’s nice of you to take the time (and sorry, my browser won’t let me reply to your reply – I’m at FEBRUARY 24, 2020 AT 10:34 PM above).
I did not make the usual mistakes (not weighing (always weigh), wrong oven temp (I have a second thermometer in there), using almond meal), but in truth I can never help making… tweaks. I used double the whey and two thirds the sugar (oops?). It could also be that I just don’t love almond flour, or maybe the extra sweetness is needed to make these tastier.
Thanks again!
I appreciate your disclosing that, Emma. You didn’t then make the recipe as written, so your comment wasn’t really directed at my recipe. Whey protein isolate has dramatic effects on baking when used other than as instructed, which I learned from painstaking recipe testing—which is why I recommend highly using the recipe as written until mastered before changing anything.
Sigh, my cookies did not rise at all unfortunately. As a result, they are dense and… not so great. Maybe I’ll try again with baking powder rather than soda.
I’d first look at any substitutions you made, Emma, (for example, almond meal instead of blached finely ground almond flour), and whether your oven was at the right temperature, whether you baked the cookies for long enough, and whether you measured by weight, not volume which is very unreliable. The recipe works when made as written.
Have you tried Monk Fruit in the Raw? It doesn’t contain any sugar alcohols, just some maltodextrin. Very light but substitutable by volume. I don’t find any after-taste as I do with the Lakanto and Monk Fruit
Hi, Judy, I’ve tried it, but never in baking. It sounds like you’ve been successful with it. I’ll have to give it a try!
Thank you for a coconut flour alternative! I recently got diagnosed with gastroparesis and I’m still figuring out what does and doesn’t sit well with my stomach. A couple of my favourite cookie recipes have coconut flour which disagrees with me badly now so I’m looking forward to having something to try as a replacement !
I’m afraid it’s definitely not a reliable alternative, Mia. If there is only a small amount of coconut flour in a recipe, like this one, it’s worth trying. But I definitely can’t promise results!
I can’t digest any of the sugar alcohols, and I struggle with finding the right balance with the monk fruit only. Could I use coconut sugar only?
I would recommend using granulated sugar, then, Wendy. Coconut palm sugar has a very coarse ground and unique taste.
Another victorious variation of ccc! Always welcome here, honestly. Would I be nutty to go halvsies on the eurythritol and some coconut palm sugar?
Also, the peanut butter protein cookie recipe mentioned in the substitutions uses no-stir peanut butter (rather than the pb powder mentioned). I only point it out for anyone else whose heart goes pitter patter for peanut butter powder ?
Thank you Nicole!
It’s worth a shot, Julie, to try half coconut palm sugar and half erythritol. I honestly can’t hazard a guess about how it would turn out, though. You’re absolutely right about the peanut butter protein cookies. I made the correction in the text. The peanut butter powder is in the oat-based protein cookies.