

These almond flour muffins are just like the generous muffins you see in a bakery, but way lower carb and only lightly sweet. Make them with chocolate chips, whatever mix-in you like, or nothing at all!

What makes these almond flour muffins special
My kids really, really love it when I bake with almond flour. They don't know Paleo from Schmaleo. They just know what they like. And these almond flour muffins keep my kids full all morning when they have them for breakfast.
My family likes that these muffins are sweet, tender and filling. I like that they're lightly sweet, packed with lots of healthy fats and low in simple carbs. I consider these a true breakfast food, and they also double as a great afternoon gf snack.
These almond flour muffins are, in fact, compliant with the Paleo diet, but I find myself less and less concerned with labels like that. I've tried eating every which way (low carb, Mediterranean, Paleo, sugar-free grain-free, you name it), and I mostly feel best when I eat mostly plants, some protein and healthy fats, like these grain free muffins.
Notes on almond flour muffins ingredients
- Almond flour – This recipe can be made only with finely ground, blanched almond flour. Blanched almond flour is just almond flour that is made with almonds that have had their outer skins removed. Your almond flour must be finely ground, and never coarsely ground almond meal, or your muffins won't hold together or even look much like muffins at all. I really like Honeyville brand, Wellbee's brand, and nuts.com sells a nice version. Just be sure it's finely ground and blanched.
- Tapioca starch/flour – Tapioca starch (also known as tapioca flour) helps balance the high fat content of almond flour, lightening the batter, and helping hold the muffins together without being too crumbly.
- Baking soda – This is the only chemical leavener in these muffins, and it gets activated as soon as it's added to liquid, so work quickly to get the muffins into the oven after you make the batter. Baking soda also helps baked goods brown in the oven.
- Salt – This balances the sweetness and brightens all the other flavors.
- Pure maple syrup – The only added sweetener, pure maple syrup adds sweetness and tenderness to these muffins. Plus, that caramel flavor of real maple syrup adds real depth of flavor.
- Applesauce – Make sure you're using smooth, unsweetened applesauce, since we are already sweetening these almond flour muffins with maple syrup. Chunky applesauce won't have as much moisture as smooth, and it won't mix into the batter as well. If you're using homemade applesauce, puree it well.
- Virgin coconut oil – This is the kind of coconut oil that's solid at cool room temperature (in warm weather, it's usually kind of soft in the pantry). If you're at all concerned about coconut flavor, be sure to use a triple-filtered kind of coconut oil, which removes any trace of coconut.
- Eggs – This recipe calls for 3 eggs, which provide structure and help these muffins rise in the oven. The weight measurement I provide is really just for those readers who use farm-fresh eggs that haven't been sorted into sizes. I use large cage free eggs.
- Miniature chocolate chips – I really love Enjoy Life brand miniature chocolate chips, since they're dairy free and gluten free (and also free of all top 8 allergens) and they're also dark and rich and are never white with the bloom that can appear on lesser quality chocolate chips.

Tips for baking the perfect almond flour muffins every time
Mix your almond flour with tapioca starch
Almond flour mixed with tapioca starch/flour is my current favorite mixture for baking things like our recipe for almond flour cookies. Finely ground, blanched almond flour is already pretty versatile in baking, and adding tapioca absorbs some of the fat, leading to more even baking and lighter baked goods in general.
Avoid using almond meal
Almond meal is made from coarsely ground almonds that haven't been blanched to remove their skins. Since it isn't finely ground, like our almond flour, it doesn't blend into the tapioca starch, or into the rest of the muffin batter, fully. It tends to make crumbly, oily baked goods.
Make sure your ingredients are at the right temperature
Ingredients that clump when they're cold, like coconut oil and even almond flour (all that healthy fat!), won't blend well into the other ingredients in the batter. So make sure your applesauce, eggs, maple syrup, and any other ingredients you store in the refrigerator come to room temperature before you combine them into the batter, or they'll cause ingredients that tend to clump to do just that! If your eggs are cold, try floating them in a bowl of very warm (not hot) water right from the tap for about 15 minutes.
Be sure to use full sized muffin tins
The batter is relatively loose and thin, but the muffins rise quite a bit and rather quickly. There's not a lot of chemical leavener in these muffins, but there are 3 eggs in just 12 muffins and that means a fair amount of rise, so make sure your muffin tins aren't on the small side.
Don't bake your almond flour muffins too hot
Almond flour baked goods have a tendency to burn in the oven, which is why we bake these muffins at only 325°F. We don't have the option of baking first at 425°F to get the muffins to rise into a nice dome like we do with our gluten free applesauce muffins, or the bottoms and sides would burn. Most ovens run hot, so be sure to gauge your oven's temperature using a standalone oven thermometer and adjust your oven's dial accordingly.

Almond flour muffins variation suggestions
You can leave out the chocolate chips, or swap them for another mix-in, like chopped nuts or dried fruit. Just be careful not to mix in anything with too much moisture as that will change the entire balance.
If you'd like to add some warm spices to your almond flour muffins, try adding 1 teaspoon of ground cinnamon to the batter, and then a mixture of cinnamon-sugar to the tops of the muffins before baking. I'd probably leave out the chocolate chips entirely in that case.

FAQs
Can I freeze these almond flour muffins?
Yes, these almond flour muffins freeze quite well. Just wrap them tightly in freezer-safe wrap, or place them in an air tight freezer safe container with a tight-fitting lid. They won't freeze solid, and you can defrost them on the counter overnight or in the microwave quickly on low power.
Are these almond flour muffins Paleo?
Yes, these almond flour muffins, made without grains, dairy, or refined sugars, are appropriate to eat on a Paleo diet.
Can I make miniature muffins with this almond flour muffins recipe?
You can try to make 24 mini muffins in a light-colored muffin tin with this same recipe. I would make sure the wells are full-sized, and really watch the baking time because they're even more likely to burn than the full-sized muffins.

Almond flour muffins ingredient substitution suggestions
Since these muffins are already compliant with the Paleo diet, they're gluten free, grain free and dairy-free. Here are a few words about the other possible ingredients you might like to substitute in this recipe. Please keep in mind that these are my educated guesses, but I haven't tried these substitutions so you'll have to experiment!
Can you make these almond flour muffins egg-free?
Since this recipe has 3 whole eggs, it's more difficult to replace them with a substitute. Generally, my go-to egg substitute is a “chia egg” (1 tablespoon ground chia seeds + 1 tablespoon of lukewarm water, mixed and allowed to gel), but I'm not really sure it would work in this recipe. I do not recommend Ener-G egg replacer.
Almond flour muffins without coconut oil
If you'd like to replace the virgin coconut oil, I recommend trying Spectrum brand nonhydrogenated vegetable shortening. I do not recommend Earth Balance buttery sticks in this recipe, as they have way more moisture.
Almond flour muffins without applesauce
These muffins do not taste at all like applesauce, as it's a relatively neutral flavor in baking. If you can't have it, you can try replacing it with mashed bananas, but the end result will taste like bananas. You'd probably be better off with our almond flour banana muffins recipe!
Almond flour muffins without almond flour
If you can't have almonds, you can try finely ground cashew flour or even finely ground blanched hazelnut flour. It should work great. To avoid nuts and nut flours entirely, but still go grain-free, I recommend trying my Paleo Blueberry Muffins, as they're made entirely with coconut flour. If you'd like to try sunflower seed flour, feel free to experiment, but know that the baking soda in the recipe can react with the chlorophyll in the sunflower seeds and turn your muffins green!
Can you make almond flour muffins without tapioca flour/starch?
Generally, tapioca starch has no proper substitute as it's unique in its behavior in baking (in all the best ways). But I have a sneaking suspicion (read: I have not tried this!) that arrowroot might work in its place here. You might also try superfine glutinous rice flour, also known as sweet white rice flour.
Almond flour muffins without maple syrup
Maple syrup is considerably thinner and less viscous than honey, so I don't recommend using honey in its place here. But I bet agave syrup would work just fine.
Bakery-Style Almond Flour Muffins
Ingredients
- 2 cups (240 g) finely-ground blanched almond flour
- 1 cup (128 g) tapioca starch/flour
- ¾ teaspoon baking soda
- ½ teaspoon kosher salt
- 5 tablespoons (105 g) pure maple syrup
- ¼ cup (60 g) smooth applesauce at room temperature
- 4 tablespoons (56 g) virgin coconut oil melted and cooled
- 3 (150 g (weighed out of shell)) eggs at room temperature, beaten
- 3 ounces miniature dairy-free chocolate chips
Instructions
- Preheat your oven to 325°F. Grease or line a standard 12-cup muffin tin, and set it aside.
- In a large bowl, place the almond flour, tapioca starch/flour, baking soda and salt, and whisk to combine.
- Create a well in the center of the dry ingredients and add the maple syrup, applesauce, coconut oil, and eggs, and mix until well-combined. The batter will be thick but smooth.
- Add the miniature chocolate chips, and mix until evenly distributed throughout the batter.
- Divide the batter evenly among the prepared wells of the muffin tin, and shake back and forth until the batter is evenly distributed in each cup.
- Place in the center of the preheated oven and bake until a toothpick inserted in the center comes out clean (about 17 minutes).
- Do not overbake, and be sure that your oven temperature is accurate or the muffins will burn as almond flour has that tendency.
- Allow to cool very briefly before transferring the muffins to a wire rack to cool completely. Serve immediately or store covered at room temperature for 2 days or wrap tightly and freeze for longer storage.
Notes
Nutrition
Bakery-Style Almond Flour Muffins
Ingredients
- 2 cups (240 g) finely-ground blanched almond flour
- 1 cup (128 g) tapioca starch/flour
- ¾ teaspoon baking soda
- ½ teaspoon kosher salt
- 5 tablespoons (105 g) pure maple syrup
- ¼ cup (60 g) smooth applesauce at room temperature
- 4 tablespoons (56 g) virgin coconut oil melted and cooled
- 3 (150 g (weighed out of shell)) eggs at room temperature, beaten
- 3 ounces miniature dairy-free chocolate chips
Instructions
- Preheat your oven to 325°F. Grease or line a standard 12-cup muffin tin, and set it aside.
- In a large bowl, place the almond flour, tapioca starch/flour, baking soda and salt, and whisk to combine.
- Create a well in the center of the dry ingredients and add the maple syrup, applesauce, coconut oil, and eggs, and mix until well-combined. The batter will be thick but smooth.
- Add the miniature chocolate chips, and mix until evenly distributed throughout the batter.
- Divide the batter evenly among the prepared wells of the muffin tin, and shake back and forth until the batter is evenly distributed in each cup.
- Place in the center of the preheated oven and bake until a toothpick inserted in the center comes out clean (about 17 minutes).
- Do not overbake, and be sure that your oven temperature is accurate or the muffins will burn as almond flour has that tendency.
- Allow to cool very briefly before transferring the muffins to a wire rack to cool completely. Serve immediately or store covered at room temperature for 2 days or wrap tightly and freeze for longer storage.
Heather says
Perfect! My 6yo can be a picky eater in the morning, but will always say yes to a chocolate-chip muffin. He LOVES these, and now I have a yummy, healthy, and easy-to-make breakfast treat that the whole family can feel good about eating! Thank you!!
Diane says
I would love to try your recipe, but I need sugar-free recipes. Could I substitute stevia for the maple syrup?
Nicole Hunn says
I’m afraid I don’t recommend that, no. Lankato brand alternative sugars make a maple syrup alternative that you might be able to use, but it will likely produce drier muffins. I can’t promise results, but you’re welcome to experiment on your own!
Cheryl Hayes says
Just took these out of the oven. I had enough self control to wait until they cooled. These muffins are delicious! I thought they might be too sweet with maple syrup, but not at all. The texture and sweetness are just right. Thanks Nicole, for another great recipe.
Nicole Hunn says
The maple syrup is less sweet than honey, and adds some really nice depth of flavor. I’m so glad you’re enjoying them, Cheryl!
Chris says
These are great! I used arrowroot in place of the tapioca. I was out of plain apple sauce so I subbed my homemade apple butter. It added a bit more sweetness and fall spice flavor. Texture and rise are great. Thank you for the recipe!
Nicole Hunn says
I’m glad to hear all your substitutions worked out, Chris!
Florence says
These muffins are awesome
Nicole Hunn says
Thank you, Florence!
Suuz says
The best!
Thank you so much for sharing!
Greeting from Holland!
Alene says
Believe it or not, I can’t eat applesauce. I have IBS and the no list is terrible. Can I use yogurt in its place? Or pumpkin? I hate to be those people who need the entire recipe changed. But these muffins really caught my eye. Thank you!
Nicole Hunn says
Hi, Alene, oh no! I actually cover that in the substitutions section, but if you can have bananas, you might prefer my almond flour banana muffins recipe instead, which I link there. No, you definitely can’t use yogurt.
Alene says
Nope, I can’t eat bananas either. At least, ripe bananas. I can eat one that has no black spots at all. I think I’m going to forget it. Thank you for getting back to me so quickly.
Jeanne Clark says
Can’t wait to try these! Thanks
Vickie says
I just made this with dried cranberries and orange zest… amazing. I didn’t have blanched almond flour (bought the wrong thing at the store) but decided to give it a go anyway. Don’t know if it will make any difference in storage/freezing( like they are going to last that long.. haha) but they have a wonderful coarse and hearty texture. Will definitely make again.. and try with the blanched to see which I like best. Thanks Nicole.. it is a winner either way!!
Nicole Hunn says
I really recommend making the muffins with finely ground, blanched almond flour, Vickie! If you liked it made “wrong,” you’ll be amazed at what it’s like “right”!! :)
Jana Hyde Neugebauer says
Hi Nicole, I made these last night and they are delicious! This was the first time I baked using weights rather than volume. You taught me well in you GF flour class. Thank you!
Nicole Hunn says
That’s so awesome, Jana!! I’m so glad you’re now comfortable baking by weight. There’s just too much potential for user error (from alllll of us, me included!) to bake by volume except for things like baking powder and baking soda, which are simply too light to measure by weight without a very sensitive scale. Thanks so much for letting us know. :)
Sheree says
Thank you for sharing your recipe and tips,I am going to try it soon with the Cashew flour. The recipe sounds very good
Carol Anne Maisey says
Thank you! Just made using fresh blueberries with a little lemon zest – DELICIOUS!
I make the mini muffins which is great for the WW’s in the crowd.
Nicole Hunn says
Oh, minis are a great idea, Carol Anne!! Did you calculate points for a mini? If you did, please share your findings. :)
Dana Schwartz says
Nicole, as always, your recipes are a hit! I’ve been trying to make my son tasty – but healthy – breakfasts, also with low sugar, and this recipe hits all the marks. I LOVE baking with almond flour because it adds protein and healthy fat and also a subtle sweetness, I think. I actually only had a little over a half a cup of arrowroot starch/flour, so I added cornstarch to fill it up to a cup. It came out great! Though I must say, seeing the batter swimming with eggs was a little concerning, but it all worked out perfectly in the end :)
Nicole Hunn says
Those are all the requirements I have for grab-and-go snacks and breakfasts for my kids, too, Dana!!
Sandra Schroppe says
What is blanched almond flour?? I am only familiar with almond flour.
Thanks,
Sandra
Nicole Hunn says
Hi, Sandra,
I really should do a post all about almonds and nut flours! Blanched almond flour is finely ground flour milled from almonds that have been blanched, or boiled briefly to loosen the skins which are then removed.
Charlotte Moore says
These look delicious. Still too many net carbs for a low carb diet or kept diet.
Charlotte Moore says
oops!! Keto diet.
Nicole Hunn says
These are not designed for a keto diet, Charlotte, or any other diet specifically!
Patricia Wilson says
Love the ingredients on these muffins but do you have nutrition information on them? Trying to count my WW
points.
Nicole Hunn says
Hi, Patricia,
As I explained in response to another commenter, I plugged this recipe into the Weight Watchers recipe calculator, and it had so many points (9 SmartPoints!) that I didn’t bother to include any reference to that. Just too many points! I don’t have nutrition information, no, but feel free to plug the ingredients in yourself!
Rhonda says
how many carb grams per muffin?
Nicole Hunn says
I’m not sure, Rhonda. Feel free to plug the recipe into an online nutrition calculator. That’s all I’d do!
Linda says
When you say “mix,” do you mean to continue to whisk, or mix by spoon. …or does this mean with a mixer? I see this in many recipes, everywhere, and am never sure.
Nicole Hunn says
Mix means to mix with a spoon in recipes, Linda. If it’s with an electric mixer of any sort, it should say so.
Anna says
Hello,
Do you have any idea how many weight watcher points there would be in a muffin?
Thank you!
Nicole Hunn says
I actually looked, Anna, and it’s not pretty! They’re large muffins, and near as I can tell each is 9 SmartPoints. ?
Diane G. says
My family is not crazy about muffins. Can I bake this in a pan and if so, what size pan should I use so they can be cut into squares or rectangles? The recipe sounds awesome and I love baking and cooking with almond flour.
Nicole Hunn says
Hi, Diane,
No I’m afraid I don’t recommend baking this as a cake. Please have a look at my other Paleo recipes. I’m sure you’ll find something you like.
Scott Cannon says
Excellent Paleo baked good – the first that even the kids enjoyed. Since my wife is allergic to almonds, I used the ground cashews that recently arrived at our local Trader Joes using the same weight as the almond flour. We also used coconut milk (the drinkable kind). The batter came out less thick than described and needed 3 minutes longer in the oven. They also were slightly oily, so may reduce the shortening next time.
If they are available locally, Guittard Real Semisweet Chocolate baking chips are dairy (and grain) free and taste much better than the Enjoy Life chips.
Marjan Crabtree says
These are soo yummy!! Kids love them too. I did reduce the honey to 100 grams.
Liz says
Noooo Nicole! I’ve been trying not to hear the siren call of the half packet of choc chips lurking at the back of my pantry. In week 10 of no grains, no gluten, no dairy, no refined sugars and doing so well….and then you post this. Can I resist…?
Melissa says
Check out Enjoy Life Chocolate Chips for Grain/Dairy free!
Ellen says
Húe makes lovely dark chocolate gems that conform to Paleo criteria.
Anneke says
That sounds like breakfast at my house, plus a glass of milk and a big glass of water. Oddly, the glass of water causes the most complaining. Really? You’re ruining my positive morning energy over water? Apparently it is something to do with the nasty school bathrooms and not enough time to go between classes. Whatever. You want me to make breakfast, you get the water. And the muffins. Sounds like a good deal to me! I have done a little with almond flour, but seems like it is time for me to embrace it fully. Almonds are really good for runners, and I have lots of those living here.
By the way, I pre-ordered! But you probably guessed that, if I haven’t already told you!
Donia Robinson says
Anneke, you definitely need to embrace almond flour. The texture is so incredible. Never grainy, always light and fluffy. So. Good.
Jennifer Sasse says
Yes girls – but what about the fat content? :(
Danyell says
Almonds are a good fat though. It is good for you!
Donia Robinson says
That’s my thought. I feel like the fat and protein in the almonds are better than empty carbs. My 2 cents… ;)
Anneke says
Believe me, Jennifer, no worries about the fat content with these kids! Now, I am another story . . .
Donia Robinson says
Oh, and I’ve heard that almond flour baked goods are good for people with diabetes, so that’s another reason for you to embrace it!
Nicole Hunn says
Very good point, Donia!
Donia Robinson says
I look forward to making these! I LOVE almond flour. It’s pretty amazing what you can bake without a true “flour.”